Stem-loop rno-mir-26b

Accession

MI0000858

Description

Rattus norvegicus rno-mir-26b precursor miRNA

Gene family

MIPF0000043; mir-26

Literature search

40 open access papers mention rno-mir-26b
(167 sentences)

Sequence

2349459 reads, 2546 reads per million, 507 experiments

ugcccgggacccagUUCAAGUAAUUCAGGAUAGGUuguggugcuggccagCCUGUUCUCCAUUACUUGGCUCgggggccggugcc
.((((((..((((((.((((((((..(((((((((..((((....)))))))))))))..))))))))))).)))..)))).)).

Structure

u  -    ga   -   U        UC         ug    g 
 gc ccgg  ccc agU CAAGUAAU  AGGAUAGGU  uggu c
 || ||||  ||| ||| ||||||||  |||||||||  ||||  
 cg ggcc  ggg UCG GUUCAUUA  UCUUGUCCg  accg u
c  u    gg   C   -        CC         --    g 

Annotation confidence High

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [3]. The ends of the miRNA may be offset with respect to previous annotations.

Genome context

chr9: 81675275-81675359 [+]

Mature rno-miR-26b-5p

• Accession: MIMAT0000797
• Description: Rattus norvegicus rno-miR-26b-5p mature miRNA
• Sequence: 15 - UUCAAGUAAUUCAGGAUAGGU - 35
• Evidence: experimental ; cloned [1-3], SOLiD [4]

Mature rno-miR-26b-3p

• Accession: MIMAT0004714
• Description: Rattus norvegicus rno-miR-26b-3p mature miRNA
• Sequence: 51 - CCUGUUCUCCAUUACUUGGCUC - 72
• Evidence: experimental ; cloned [3], SOLiD [4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


4. PubMed ID: 15345052
   Microarray analysis of microRNA expression in the developing mammalian brain
   Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
   Genome Biol (2004) 5:R68