Stem-loop sequence rno-mir-28

Accession

MI0000861 (change log)

Description

Rattus norvegicus miR-28 stem-loop

Gene family

MIPF0000057; mir-28

Literature search

13 open access papers mention rno-mir-28
(17 sentences)

Stem-loop

      c   a   gca                --uu   -u  cu 
5' ggu ccu ccc   aggagcucacagucua    gag  uc  u
   ||| ||| |||   ||||||||||||||||    |||  ||  u
3' uca gga ggg   uccucgaguguuagau    cuc  ag  u
      c   c   agg                cacc   uu  uc 

Deep sequencing

1320051 reads, 1e+03 reads per million, 507 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr11: 79380523-79380608 [-]
• Overlapping transcripts:

  sense

  ENSRNOT00000044279 ; Lpp-201; intron 7

Database links

• EntrezGene:Mir28
• miRBase Tracker:MI0000861

Mature sequence rno-miR-28-5p

• Accession: MIMAT0000800
• Previous IDs: rno-miR-28
• Sequence: 14 - aaggagcucacagucuauugag - 35
• Deep sequencing: 223542 reads, 499 experiments
• Evidence: experimental; cloned [1-3], SOLiD [4]
• Predicted targets:
  • TargetScanVert:rno-miR-28-5p
  • miRDB:rno-miR-28-5p
  • microrna.org:rno-miR-28-5p

Mature sequence rno-miR-28-3p

• Accession: MIMAT0004716
• Previous IDs: rno-miR-28*
• Sequence: 54 - cacuagauugugagcuccugga - 75
• Deep sequencing: 1096508 reads, 506 experiments
• Evidence: experimental; cloned [3], SOLiD [4]
• Predicted targets:
  • TargetScanVert:rno-miR-28-3p
  • miRDB:rno-miR-28-3p
  • microrna.org:rno-miR-28-3p

References

1. PMID:15345052 "Microarray analysis of microRNA expression in the developing mammalian brain" Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR Genome Biol. 5:R68(2004).
2. PMID:16766679 "Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes" Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H Genes Dev. 20:1732-1743(2006).
3. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
4. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).