Stem-loop rno-mir-29b-1

Accession

MI0000864

Description

Rattus norvegicus rno-mir-29b-1 precursor miRNA

Literature search

123 open access papers mention rno-mir-29b-1
(1144 sentences)

Sequence

106311 reads, 80 reads per million, 483 experiments

cuucaggaagcuggUUUCAUAUGGUGGUUUAGAUUUaaauagugauugucUAGCACCAUUUGAAAUCAGUGUUcuuggugg
(.(((((((((((((((((.((((((..((((((.............)))))))))))).)))))))))).))))))).).

Structure

- u       -          U      GU      UUaaa 
 c ucaggaa gcuggUUUCA AUGGUG  UUAGAU     u
 | ||||||| |||||||||| ||||||  ||||||     a
 g gguucUU UGACUAAAGU UACCAC  GAUcug     g
g u       G          U      --      uuagu 

Annotation confidence Medium

Genome context

chr4: 58344310-58344390 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from rno-mir-29b-1

Mature rno-miR-29b-3p

• Accession: MIMAT0000801
• Description: Rattus norvegicus rno-miR-29b-3p mature miRNA
• Sequence: 51 - UAGCACCAUUUGAAAUCAGUGUU - 73
• Evidence: experimental ; cloned [1-4], SOLiD [5]

Mature rno-miR-29b-1-5p

• Accession: MIMAT0005445
• Description: Rattus norvegicus rno-miR-29b-1-5p mature miRNA
• Sequence: 15 - UUUCAUAUGGUGGUUUAGAUUU - 36
• Evidence: experimental ; cloned [3], SOLiD [5]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


4. PubMed ID: 15345052
   Microarray analysis of microRNA expression in the developing mammalian brain
   Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
   Genome Biol (2004) 5:R68


5. PubMed ID: 17805466
   Cloning and identification of novel microRNAs from rat hippocampus
   "He X, Zhang Q, Liu Y, Pan X"
   "Acta Biochim Biophys Sin (Shanghai) (2007) 39:708-714