Stem-loop rno-mir-30d

Accession

MI0000869

Description

Rattus norvegicus rno-mir-30d precursor miRNA

Gene family

MIPF0000005; mir-30

Literature search

60 open access papers mention rno-mir-30d
(355 sentences)

Sequence

9661051 reads, 10717 reads per million, 515 experiments

aagucugugucUGUAAACAUCCCCGACUGGAAGcuguaagccacagccaagCUUUCAGUCAGAUGUUUGCUGCuacuggcuc
.((((.(((.(.(((((((((...(((((((((((....((....))..))))))))))).))))))))).).))).)))).

Structure

a    u   u U         CCC           guaa  c 
 aguc gug c GUAAACAUC   GACUGGAAGcu    gc a
 |||| ||| | |||||||||   |||||||||||    ||  
 ucgg cau G CGUUUGUAG   CUGACUUUCga    cg c
c    u   C U         --A           --ac  a 

Annotation confidence High

Genome context

chr7: 109286463-109286544 [-]

Mature rno-miR-30d-5p

• Accession: MIMAT0000807
• Description: Rattus norvegicus rno-miR-30d-5p mature miRNA
• Sequence: 12 - UGUAAACAUCCCCGACUGGAAG - 33
• Evidence: experimental ; cloned [1-3], SOLiD [4]

Mature rno-miR-30d-3p

• Accession: MIMAT0004722
• Description: Rattus norvegicus rno-miR-30d-3p mature miRNA
• Sequence: 52 - CUUUCAGUCAGAUGUUUGCUGC - 73
• Evidence: experimental ; cloned [3], SOLiD [4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 14691248
   Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
   "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
   "Proc Natl Acad Sci U S A (2004) 101:360-365


4. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249