Stem-loop rno-mir-31a

Accession

MI0000872

Description

Rattus norvegicus rno-mir-31a precursor miRNA

Gene family

MIPF0000064; mir-31

Literature search

34 open access papers mention rno-mir-31a
(290 sentences)

Sequence

286981 reads, 349 reads per million, 484 experiments

ugcuccugaaacuuggaacuggagaggAGGCAAGAUGCUGGCAUAGCUGuugaacugagaaccUGCUAUGCCAACAUAUUGCCAUCuuuccugucugacagcagcu
.(((.(((....(((((.(.(((((((.(((((.(((.(((((((((.(((........)))..))))))))).))).))))).))))))).))))))))).))).

Structure

u   c   aaac     a u       A     G   C         -U   gaa 
 gcu cug    uugga c ggagagg GGCAA AUG UGGCAUAGC  Guu   c
 ||| |||    ||||| | ||||||| ||||| ||| |||||||||  |||    
 cga gac    agucu g ccuuuCU CCGUU UAC ACCGUAUCG  caa   u
u   c   ----     - u       A     A   A         Uc   gag 

Annotation confidence High

Genome context

chr5: 107206515-107206620 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-31a

Mature rno-miR-31a-5p

• Accession: MIMAT0000810
• Description: Rattus norvegicus rno-miR-31a-5p mature miRNA
• Sequence: 28 - AGGCAAGAUGCUGGCAUAGCUG - 49
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-31a-3p

• Accession: MIMAT0017102
• Description: Rattus norvegicus rno-miR-31a-3p mature miRNA
• Sequence: 64 - UGCUAUGCCAACAUAUUGCCAUC - 86
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249