Stem-loop rno-mir-33

Accession

MI0000874

Description

Rattus norvegicus rno-mir-33 precursor miRNA

Gene family

MIPF0000070; mir-33

Literature search

23 open access papers mention rno-mir-33
(137 sentences)

Sequence

14910 reads, 42 reads per million, 469 experiments

ccgugGUGCAUUGUAGUUGCAUUGCAuguucuggcaguaccugugCAAUGUUUCCACAGUGCAUCAcgg
((((((((((((((.(..((((((((((....((.....))))))))))))..).))))))))))))))

Structure

              A UU          uucu  c 
ccgugGUGCAUUGU G  GCAUUGCAug    gg a
|||||||||||||| |  ||||||||||    || g
ggcACUACGUGACA C  UGUAACgugu    cc u
              C UU          ----  a 

Annotation confidence High

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The ends of the miRNA may be offset with respect to previous annotations.

Genome context

chr7: 123431612-123431680 [+]

Mature rno-miR-33-5p

• Accession: MIMAT0000812
• Description: Rattus norvegicus rno-miR-33-5p mature miRNA
• Sequence: 6 - GUGCAUUGUAGUUGCAUUGCA - 26
• Evidence: experimental ; cloned [1-2], SOLiD [3]

Mature rno-miR-33-3p

• Accession: MIMAT0017104
• Description: Rattus norvegicus rno-miR-33-3p mature miRNA
• Sequence: 46 - CAAUGUUUCCACAGUGCAUCA - 66
• Evidence: experimental ; SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249