Stem-loop rno-mir-34c

Accession

MI0000876

Description

Rattus norvegicus rno-mir-34c precursor miRNA

Literature search

58 open access papers mention rno-mir-34c
(232 sentences)

Sequence

901529 reads, 4292 reads per million, 494 experiments

agucuaguuacuAGGCAGUGUAGUUAGCUGAUUGCuaauaguaccAAUCACUAACCACACAGCCAGGuaaaaagacu
(((((..(((((.(((.((((.(((((.((((((.((....)).))))))))))).)))).))).)))))..)))))

Structure

     ag     A   A    A     C      C  a 
agucu  uuacu GGC GUGU GUUAG UGAUUG ua u
|||||  ||||| ||| |||| ||||| |||||| ||  
ucaga  aauGG CCG CACA CAAUC ACUAAc au a
     aa     A   A    C     -      c  g 

Annotation confidence Medium

Genome context

chr8: 55492024-55492100 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-34c

Mature rno-miR-34c-5p

• Accession: MIMAT0000814
• Description: Rattus norvegicus rno-miR-34c-5p mature miRNA
• Sequence: 13 - AGGCAGUGUAGUUAGCUGAUUGC - 35
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-34c-3p

• Accession: MIMAT0004723
• Description: Rattus norvegicus rno-miR-34c-3p mature miRNA
• Sequence: 46 - AAUCACUAACCACACAGCCAGG - 67
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249