Stem-loop rno-mir-93

Accession

MI0000880

Description

Rattus norvegicus rno-mir-93 precursor miRNA

Literature search

29 open access papers mention rno-mir-93
(112 sentences)

Sequence

436661 reads, 377 reads per million, 499 experiments

agucaugggggcucCAAAGUGCUGUUCGUGCAGGUAGugcauugccugaccuACUGCUGAGCUAGCACUUCCCGAgcccccaggaca
.(((.(((((((((..((((((((((((.((((.(((..((.....))..)))))))))))).)))))))...))))))))).))).

Structure

a   a         -CA       -     U    G   ug  u 
 guc ugggggcuc   AAGUGCU GUUCG GCAG UAG  ca u
 ||| |||||||||   ||||||| ||||| |||| |||  || g
 cag acccccgAG   UUCACGA CGAGU CGUC Auc  gu c
a   g         CCC       U     -    -   ca  c 

Annotation confidence Medium

Genome context

chr12: 19307543-19307629 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from rno-mir-93

Mature rno-miR-93-5p

• Accession: MIMAT0000817
• Description: Rattus norvegicus rno-miR-93-5p mature miRNA
• Sequence: 15 - CAAAGUGCUGUUCGUGCAGGUAG - 37
• Evidence: experimental ; cloned [1-3], SOLiD [4]

Mature rno-miR-93-3p

• Accession: MIMAT0017109
• Description: Rattus norvegicus rno-miR-93-3p mature miRNA
• Sequence: 53 - ACUGCUGAGCUAGCACUUCCCGA - 75
• Evidence: experimental ; SOLiD [4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 14691248
   Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
   "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
   "Proc Natl Acad Sci U S A (2004) 101:360-365


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


4. PubMed ID: 15345052
   Microarray analysis of microRNA expression in the developing mammalian brain
   Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
   Genome Biol (2004) 5:R68