miRBase entry: rno-mir-100

Stem-loop rno-mir-100


Accession
MI0000885
Description
Rattus norvegicus rno-mir-100 precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
22 open access papers mention rno-mir-100
(147 sentences)

Sequence

916584 reads, 1414 reads per million, 488 experiments
ccuguugccacaAACCCGUAGAUCCGAACUUGUGcugaccaugcacaCAAGCUUGUGUCUAUAGGUaugugucuguuagg
((((....((((.(((.((((((.(((.((((((.((......)))))))).))).)))))).))).)))).....))))

Structure
    -uugc    A   C      C   A      c  ac 
ccug     caca ACC GUAGAU CGA CUUGUG ug  c
||||     |||| ||| |||||| ||| |||||| ||   
ggau     gugu UGG UAUCUG GUU GAACac ac  a
    ugucu    a   A      U   C      -  gu 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr8: 45746948-45747027 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from rno-mir-100
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-100-5p

Accession MIMAT0000822
Description Rattus norvegicus rno-miR-100-5p mature miRNA
Sequence 13 - AACCCGUAGAUCCGAACUUGUG - 34
Evidence experimental
cloned [1-2], Northern [1], SOLiD [3]

Mature rno-miR-100-3p

Accession MIMAT0017112
Description Rattus norvegicus rno-miR-100-3p mature miRNA
Sequence 48 - CAAGCUUGUGUCUAUAGGU - 66
Evidence experimental
SOLiD [3]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 14691248
    Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
    "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
    "Proc Natl Acad Sci U S A (2004) 101:360-365

  3. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249