Stem-loop sequence rno-mir-106b

Accession MI0000889
Description Rattus norvegicus miR-106b stem-loop
Gene family MIPF0000001; mir-17
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled mir-17_microRNA_precursor_family. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

The miR-17 microRNA precursor family are a group of related small non-coding RNA genes called microRNAs that regulate gene expression. The microRNA precursor miR-17 family, includes miR-20, miR-91, and miR-103. miRNAs are transcribed as ~70 nucleotide precursors and subsequently processed by the Dicer enzyme to give a ~22 nucleotide product. In this case the mature sequence comes from the 3' arm of the precursor. The products are thought to have regulatory roles through complementarity to the 3' UTR of mRNA. A screen of 17 miRNAs that have been predicted to regulate a number of breast cancer associated genes found variations in the microRNAs miR-17 and miR-30c-1, these patients were noncarriers of BRCA1 or BRCA2 mutations, lending the possibility that familial breast cancer may be caused by variation in these miRNAs.

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Stem-loop
        ga -ua       g       agaua    uc u 
ccugcugg  c   aagugcu acagugc     gugg  c c
||||||||  |   ||||||| |||||||     ||||  | u
ggacgacc  g   uucaugg ugucacg     cauc  g c
        uc ucg       g       ----c    gu u 
Get sequence
Genome context
Coordinates (RGSC3.4) Overlapping transcripts
12: 17608382-17608463 [-]
sense
ENSRNOT00000001825 ; Mcm7; intron 12
ENSRNOT00000001825 ; Mcm7; intron 12
ENSRNOT00000001825 ; Mcm7; intron 12
Clustered miRNAs
< 10kb from rno-mir-106b
rno-mir-106b 12: 17608382-17608463 [-]
rno-mir-93 12: 17608173-17608259 [-]
rno-mir-25 12: 17607970-17608053 [-]
Database links

Mature sequence rno-miR-106b-5p

Accession MIMAT0000825
Previous IDs rno-miR-106b
Sequence

12 - 

uaaagugcugacagugcagau

 - 32

Get sequence
Evidence experimental; cloned [1-2], SOLiD [3]
Predicted targets

Mature sequence rno-miR-106b-3p

Accession MIMAT0004727
Previous IDs rno-miR-106b*
Sequence

52 - 

ccgcacuguggguacuugcugc

 - 73

Get sequence
Evidence experimental; cloned [2], SOLiD [3]
Predicted targets

References

1
2
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).