miRBase entry: rno-mir-122

Stem-loop rno-mir-122


Accession
MI0000891
Description
Rattus norvegicus rno-mir-122 precursor miRNA
Gene family
MIPF0000095; mir-122

Literature search
71 open access papers mention rno-mir-122
(698 sentences)

Sequence

1243408 reads, 3864 reads per million, 293 experiments
ccuuagcagagcucUGGAGUGUGACAAUGGUGUUUGuguccaaaacaucaAACGCCAUCAUCACACUAAacagcuacugcuaggc
.((((((((((((.(..(((((((..(((((((((((((.....))).))))))))))..)))))))..).)))).)))))))).

Structure
c        -    c GG       CA          -   c 
 cuuagcag agcu U  AGUGUGA  AUGGUGUUUG ugu c
 |||||||| |||| |  |||||||  |||||||||| ||| a
 ggaucguc ucga a  UCACACU  UACCGCAAac aca a
c        a    c AA       AC          u   a 


Annotation confidence High
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Genome context
chr18: 60755285-60755369 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-122
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-122-5p

Accession MIMAT0000827
Description Rattus norvegicus rno-miR-122-5p mature miRNA
Sequence 15 - UGGAGUGUGACAAUGGUGUUUG - 36
Evidence experimental
cloned [1], SOLiD [2]

Mature rno-miR-122-3p

Accession MIMAT0017116
Description Rattus norvegicus rno-miR-122-3p mature miRNA
Sequence 51 - AACGCCAUCAUCACACUAA - 69
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249