Stem-loop rno-mir-134

Accession

MI0000907

Description

Rattus norvegicus rno-mir-134 precursor miRNA

Literature search

33 open access papers mention rno-mir-134
(110 sentences)

Sequence

42938 reads, 41 reads per million, 399 experiments

cagggugUGUGACUGGUUGACCAGAGGGGcgugcacuuuguucaccCUGUGGGCCACCUAGUCACCAAcccuc
.(((((..((((((((.((.(((.((((..(.(((...))).).)))).)))..)).))))))))..))))).

Structure

c     gU        U  -A   G    Gc u   c 
 agggu  GUGACUGG UG  CCA AGGG  g gca  
 |||||  |||||||| ||  ||| ||||  | ||| u
 ucccA  CACUGAUC AC  GGU UCcc  c ugu  
c     AC        C  CG   G    -a u   u 

Annotation confidence High

Genome context

chr6: 133884547-133884619 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from rno-mir-134

Mature rno-miR-134-5p

• Accession: MIMAT0000840
• Description: Rattus norvegicus rno-miR-134-5p mature miRNA
• Sequence: 8 - UGUGACUGGUUGACCAGAGGGG - 29
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-134-3p

• Accession: MIMAT0017125
• Description: Rattus norvegicus rno-miR-134-3p mature miRNA
• Sequence: 47 - CUGUGGGCCACCUAGUCACCAA - 68
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249