Stem-loop rno-mir-135a-1

Accession

MI0000908

Description

Rattus norvegicus rno-mir-135a-1 precursor miRNA

Literature search

105 open access papers mention rno-mir-135a-1
(422 sentences)

Sequence

55673 reads, 79.0 reads per million, 323 experiments

agauaaauucacucuagugcuuUAUGGCUUUUUAUUCCUAUGUGAucguaauaaagucucaUGUAGGGAUGGAAGCCAUGAAAuacauugugaaaauuca
.((....(((((....(((.((((((((((((.((((((((((((.(........)..)))))))))))))))))))))))).)))...)))))...)).

Structure

a  uaaa     ucua   c            U            -u gua 
 ga    uucac    gug uuUAUGGCUUUU AUUCCUAUGUGA  c   a
 ||    |||||    ||| |||||||||||| ||||||||||||  |    
 cu    aagug    cau AAGUACCGAAGG UAGGGAUGUacu  g   u
a  -uaa     -uua   A            -            cu aaa 

Annotation confidence High

Genome context

chr7: 32894877-32894976 [-]

Mature rno-miR-135a-5p

• Accession: MIMAT0000841
• Description: Rattus norvegicus rno-miR-135a-5p mature miRNA
• Sequence: 23 - UAUGGCUUUUUAUUCCUAUGUGA - 45
• Evidence: experimental ; cloned [1-2], SOLiD [3]

Mature rno-miR-135a-1-3p

• Accession: MIMAT0004732
• Description: Rattus norvegicus rno-miR-135a-1-3p mature miRNA
• Sequence: 62 - UGUAGGGAUGGAAGCCAUGAAA - 83
• Evidence: experimental ; cloned [2], SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


3. PubMed ID: 16471176
   Assessment of the microRNA system in salt-sensitive hypertension
   "Naraba H, Iwai N"
   "Hypertens Res (2005) 28:819-826