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miRBase |
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Stem-loop sequence rno-mir-138-2 |
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Accession | MI0000911 (change log) | ||||
Description | Rattus norvegicus miR-138-2 stem-loop | ||||
Gene family | MIPF0000075; mir-138 | ||||
Literature search |
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41 open access papers mention rno-mir-138-2 | ||||
Stem-loop |
gu u ag uca ---ac caa 5' ugc gc cugguguugugaa ggccg gag c ||| || ||||||||||||| ||||| ||| g 3' acg ug gaccacagcacuu ucggc cuc c cc u -g -ua ccauu cua |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Comments |
The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [3]. The ends of the miRNA may be offset with respect to previous annotations. |
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Genome context |
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Database links |
Mature sequence rno-miR-138-5p |
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Accession | MIMAT0000844 |
Previous IDs | rno-miR-138 |
Sequence |
9 - agcugguguugugaaucaggccg - 31 |
Deep sequencing | 3216645 reads, 493 experiments |
Evidence | experimental; cloned [1-4], Northern [1], SOLiD [5] |
Predicted targets |
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Mature sequence rno-miR-138-2-3p |
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Accession | MIMAT0017127 |
Previous IDs | rno-miR-138-2* |
Sequence |
56 - gcuauuucacgacaccagggu - 76 |
Deep sequencing | 1998 reads, 154 experiments |
Evidence | experimental; SOLiD [5] |
Predicted targets |
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References |
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1 |
PMID:14691248
"Identification of many microRNAs that copurify with polyribosomes in mammalian neurons"
Proc Natl Acad Sci U S A. 101:360-365(2004).
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2 |
PMID:15345052
"Microarray analysis of microRNA expression in the developing mammalian brain"
Genome Biol. 5:R68(2004).
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3 |
PMID:17604727
"A mammalian microRNA expression atlas based on small RNA library sequencing"
Cell. 129:1401-1414(2007).
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4 |
PMID:17805466
"Cloning and identification of novel microRNAs from rat hippocampus"
Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
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5 |
PMID:20403161
"Small RNA expression and strain specificity in the rat"
BMC Genomics. 11:249(2010).
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