Stem-loop rno-mir-141

Accession

MI0000914

Description

Rattus norvegicus rno-mir-141 precursor miRNA

Gene family

MIPF0000019; mir-8

Literature search

31 open access papers mention rno-mir-141
(148 sentences)

Sequence

982638 reads, 1479 reads per million, 479 experiments

ggcugacucugagUCCAUCUUCCAGUGCAGUGUUGgaugguugaaguacgaagcuccUAACACUGUCUGGUAAAGAUGGcccccgggucaguuc
.((((((((.(.(.(((((((((((.((((((((((..(.((........)).)..))))))))))))))..))))))).).).))))))))..

Structure

-g        u a U       --    U          au g  gaa 
  gcugacuc g g CCAUCUU  CCAG GCAGUGUUGg  g uu   g
  |||||||| | | |||||||  |||| ||||||||||  | ||    
  ugacuggg c c GGUAGAA  GGUC UGUCACAAUc  c aa   u
cu        c c c       AU    -          cu g  gca 

Annotation confidence High

Genome context

chr4: 157236346-157236439 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from rno-mir-141

Mature rno-miR-141-5p

• Accession: MIMAT0017128
• Description: Rattus norvegicus rno-miR-141-5p mature miRNA
• Sequence: 14 - UCCAUCUUCCAGUGCAGUGUUG - 35
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-141-3p

• Accession: MIMAT0000846
• Description: Rattus norvegicus rno-miR-141-3p mature miRNA
• Sequence: 58 - UAACACUGUCUGGUAAAGAUGG - 79
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249