Stem-loop rno-mir-143

Accession

MI0000916

Description

Rattus norvegicus rno-mir-143 precursor miRNA

Gene family

MIPF0000094; mir-143

Literature search

53 open access papers mention rno-mir-143
(405 sentences)

Sequence

124931831 reads, 88004 reads per million, 503 experiments

gcggagcgccugucucccagccugaGGUGCAGUGCUGCAUCUCUGGucaguugggagucUGAGAUGAAGCACUGUAGCUCAggaagggagaagauguucugcagc
((((((((.((.((((((..((((((.(((((((((.((((((.((((......)).)).)))))).))))))))).))))))..)))))))).))))))))...

Structure

---        c  g      ag      G         G      U  -  ag 
   gcggagcg cu ucuccc  ccugaG UGCAGUGCU CAUCUC GG uc  u
   |||||||| || ||||||  |||||| ||||||||| |||||| || ||   
   cgucuugu ga agaggg  ggACUC AUGUCACGA GUAGAG cu ag  u
cga        a  -      aa      G         A      U  g  gg 

Annotation confidence High

Genome context

chr18: 56971273-56971377 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-143

Mature rno-miR-143-5p

• Accession: MIMAT0017129
• Description: Rattus norvegicus rno-miR-143-5p mature miRNA
• Sequence: 26 - GGUGCAGUGCUGCAUCUCUGG - 46
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-143-3p

• Accession: MIMAT0000849
• Description: Rattus norvegicus rno-miR-143-3p mature miRNA
• Sequence: 60 - UGAGAUGAAGCACUGUAGCUCA - 81
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249