Stem-loop rno-mir-144

Accession

MI0000917

Description

Rattus norvegicus rno-mir-144 precursor miRNA

Literature search

184 open access papers mention rno-mir-144
(581 sentences)

Sequence

128277 reads, 159.0 reads per million, 492 experiments

gggccuuggcugGGAUAUCAUCAUAUACUGUAAGUUugugaugagacaCUACAGUAUAGAUGAUGUACUagucuggguacccc
((((((.((((((.((((((((.(((((((((.((((......))))..))))))))))))))))).)))))).)))..))).

Structure

-   --   u      G        A         -A    gu 
 ggg  ccu ggcugG AUAUCAUC UAUACUGUA  GUUu  g
 |||  ||| |||||| |||||||| |||||||||  ||||   
 ccc  ggg cugaUC UGUAGUAG AUAUGACAU  caga  a
c   au   u      A        -         Ca    gu 

Annotation confidence High

Genome context

chr10: 65291365-65291447 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-144

Mature rno-miR-144-5p

• Accession: MIMAT0017130
• Description: Rattus norvegicus rno-miR-144-5p mature miRNA
• Sequence: 13 - GGAUAUCAUCAUAUACUGUAAGUU - 36
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-144-3p

• Accession: MIMAT0000850
• Description: Rattus norvegicus rno-miR-144-3p mature miRNA
• Sequence: 49 - CUACAGUAUAGAUGAUGUACU - 69
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249