miRBase entry: rno-mir-153

Stem-loop rno-mir-153


Accession
MI0000922
Description
Rattus norvegicus rno-mir-153 precursor miRNA
Gene family
MIPF0000050; mir-153

Literature search
20 open access papers mention rno-mir-153
(151 sentences)

Sequence

121145 reads, 188 reads per million, 358 experiments
agcgguggccaguGUCAUUUUUGUGAUGUUGCAGCUaguaauaugagcccagUUGCAUAGUCACAAAAGUGAUCauuggaaacugug
.(((((..(((((((((((((((((((..(((((((.((.......))..)))))))..))))))))))))).))))))..))))).

Structure
a     gg      -             GU       -a  aa 
 gcggu  ccaguG UCAUUUUUGUGAU  UGCAGCU  gu  u
 |||||  |||||| |||||||||||||  |||||||  ||  a
 uguca  gguuaC AGUGAAAACACUG  ACGUUga  cg  u
g     aa      U             AU       cc  ag 


Annotation confidence High
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Genome context
chr6: 145105064-145105150 [+]

Database links

Mature rno-miR-153-5p

Accession MIMAT0017135
Description Rattus norvegicus rno-miR-153-5p mature miRNA
Sequence 14 - GUCAUUUUUGUGAUGUUGCAGCU - 36
Evidence experimental
SOLiD [2]

Mature rno-miR-153-3p

Accession MIMAT0000855
Description Rattus norvegicus rno-miR-153-3p mature miRNA
Sequence 53 - UUGCAUAGUCACAAAAGUGAUC - 74
Evidence experimental
cloned [1], SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249