Stem-loop rno-mir-192

Accession

MI0000935

Description

Rattus norvegicus rno-mir-192 precursor miRNA

Gene family

MIPF0000063; mir-192

Literature search

35 open access papers mention rno-mir-192
(192 sentences)

Sequence

35046617 reads, 35899 reads per million, 508 experiments

gucaagauggagugcacagggcuCUGACCUAUGAAUUGACAGCCaguacucugaucucgccucuggCUGCCAGUUCCAUAGGUCACAGguauguucgccucaaugccagc
.........(((.(((((.(.((.((((((((((((((.(((((((................))))))).))))).))))))))).)).).)))..))))).........

Structure

gucaagaug   u  --   g g  C         -     A       uacucug 
         gag gc  aca g cu UGACCUAUG AAUUG CAGCCag       a
         ||| ||  ||| | || ||||||||| ||||| |||||||        
         cuc cg  ugu u GA ACUGGAUAC UUGAC GUCgguc       u
cgaccguaa   -  cu   a g  C         C     C       uccgcuc 

Annotation confidence High

Genome context

chr1: 221634971-221635080 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-192

Mature rno-miR-192-5p

• Accession: MIMAT0000867
• Description: Rattus norvegicus rno-miR-192-5p mature miRNA
• Sequence: 24 - CUGACCUAUGAAUUGACAGCC - 44
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-192-3p

• Accession: MIMAT0017147
• Description: Rattus norvegicus rno-miR-192-3p mature miRNA
• Sequence: 67 - CUGCCAGUUCCAUAGGUCACAG - 88
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249