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miRBase |
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Stem-loop sequence rno-mir-199a |
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Accession | MI0000941 (change log) | |||||||
Description | Rattus norvegicus miR-199a stem-loop | |||||||
Gene family | MIPF0000040; mir-199 | |||||||
Literature search |
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67 open access papers mention rno-mir-199a | |||||||
Stem-loop |
uggaagcuu aga - c gcc u c --uca ac 5' cugg uccu gcuc guc ccagugu cagacuac ugu gg a |||| |||| |||| ||| ||||||| |||||||| ||| || 3' gacc ggga cggg cag gguuaca gucugaug aca cc a -------ac --- a u auu c - uguug gu |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Clustered miRNAs |
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Database links |
Mature sequence rno-miR-199a-5p |
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Accession | MIMAT0000872 |
Previous IDs | rno-miR-199a |
Sequence |
31 - cccaguguucagacuaccuguuc - 53 |
Deep sequencing | 201438 reads, 478 experiments |
Evidence | experimental; cloned [1], SOLiD [3] |
Predicted targets |
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Mature sequence rno-miR-199a-3p |
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Accession | MIMAT0004738 |
Sequence |
70 - acaguagucugcacauugguua - 91 |
Deep sequencing | 1336503 reads, 489 experiments |
Evidence | experimental; cloned [2], SOLiD [3] |
Predicted targets |
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References |
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1 | |
2 |
PMID:17604727
"A mammalian microRNA expression atlas based on small RNA library sequencing"
Cell. 129:1401-1414(2007).
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3 |
PMID:20403161
"Small RNA expression and strain specificity in the rat"
BMC Genomics. 11:249(2010).
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