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miRBase |
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Stem-loop sequence rno-mir-200c |
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Accession | MI0000942 (change log) | |||||||
Description | Rattus norvegicus miR-200c stem-loop | |||||||
Gene family | MIPF0000019; mir-8 | |||||||
Literature search |
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64 open access papers mention rno-mir-200c | |||||||
Stem-loop |
cu - a u u gg 5' cc cguc uuaccc gcaguguu ggg gcu u || |||| |||||| |||||||| ||| ||| u 3' gg guag aauggg cgucauaa cuc uga g ag u c u - gg |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Clustered miRNAs |
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Database links |
Mature sequence rno-miR-200c-5p |
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Accession | MIMAT0017150 |
Previous IDs | rno-miR-200c* |
Sequence |
5 - cgucuuacccagcaguguuug - 25 |
Deep sequencing | 526 reads, 142 experiments |
Evidence | experimental; SOLiD [2] |
Predicted targets |
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Mature sequence rno-miR-200c-3p |
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Accession | MIMAT0000873 |
Previous IDs | rno-miR-200c |
Sequence |
45 - uaauacugccggguaaugaug - 65 |
Deep sequencing | 296119 reads, 442 experiments |
Evidence | experimental; SOLiD [2] |
Predicted targets |
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References |
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1 |
PMID:14573789
"Reduced accumulation of specific microRNAs in colorectal neoplasia"
Mol Cancer Res. 1:882-891(2003).
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2 |
PMID:20403161
"Small RNA expression and strain specificity in the rat"
BMC Genomics. 11:249(2010).
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