Stem-loop rno-mir-217

Accession

MI0000956

Description

Rattus norvegicus rno-mir-217 precursor miRNA

Gene family

MIPF0000077; mir-217

Literature search

18 open access papers mention rno-mir-217
(59 sentences)

Sequence

208089 reads, 1053 reads per million, 284 experiments

accacagucauuguaguuuugaugucgcagaUACUGCAUCAGGAACUGACUGGauaagacucagucaccAUCAGUUCCUAAUGCAUUGCCUucagcaucuaaaca
...............((((.(((((.(.((.((.(((((.(((((((((.(((....(((...))).)))))))))))).))))).)).)).).))))).)))).

Structure

accacagucauugua    u     c c  a  C     C         C   auaa   u 
               guuu gaugu g ag UA UGCAU AGGAACUGA UGG    gac  
               |||| ||||| | || || ||||| ||||||||| |||    ||| c
               caaa cuacg c UC GU ACGUA UCCUUGACU Acc    cug  
--------------a    u     a u  C  U     A         -   ---a   a 

Annotation confidence High

Genome context

chr14: 113119529-113119633 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-217

Mature rno-miR-217-5p

• Accession: MIMAT0000887
• Description: Rattus norvegicus rno-miR-217-5p mature miRNA
• Sequence: 32 - UACUGCAUCAGGAACUGACUGG - 53
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-217-3p

• Accession: MIMAT0017161
• Description: Rattus norvegicus rno-miR-217-3p mature miRNA
• Sequence: 70 - AUCAGUUCCUAAUGCAUUGCCU - 91
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 12624257
   Vertebrate microRNA genes
   "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
   "Science (2003) 299:1540


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249