miRBase entry: rno-mir-218a-2

Stem-loop rno-mir-218a-2


Accession
MI0000957
Description
Rattus norvegicus rno-mir-218a-2 precursor miRNA
Gene family
MIPF0000026; mir-218

Literature search
14 open access papers mention rno-mir-218a-2
(43 sentences)

Sequence

319233 reads, 311 reads per million, 479 experiments
gaccaguugccgcggggcuuuccuUUGUGCUUGAUCUAACCAUGUgguggaacgauggaaacggaaCAUGGUUCUGUCAAGCACCGCGgaaagcaucgcucucuccugca
...(((..(..((((.(((((((...(((((((((..((((((((..((............))..))))))))..)))))))))...))))))).))))...)..)))..

Structure
gac   uu -cc    g       uUU         CU        gg  gaacg 
   cag  g   gcgg gcuuucc   GUGCUUGAU  AACCAUGU  ug     a
   |||  |   |||| |||||||   |||||||||  ||||||||  ||      
   guc  c   cgcu cgaaagG   CACGAACUG  UUGGUACa  gc     u
-ac   cu ucu    a       CGC         UC        ag  aaagg 


Annotation confidence High
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Genome context
chr10: 20428661-20428770 [+]

Database links

Mature rno-miR-218a-2-3p

Accession MIMAT0004740
Description Rattus norvegicus rno-miR-218a-2-3p mature miRNA
Sequence 67 - CAUGGUUCUGUCAAGCACCGCG - 88
Evidence experimental
cloned [3], SOLiD [4]

Mature rno-miR-218a-5p

Accession MIMAT0000888
Description Rattus norvegicus rno-miR-218a-5p mature miRNA
Sequence 25 - UUGUGCUUGAUCUAACCAUGU - 45
Evidence experimental
cloned [1-3], Northern [1-2], SOLiD [4]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 16766679
    Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
    "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
    "Genes Dev (2006) 20:1732-1743

  3. PubMed ID: 14691248
    Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
    "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
    "Proc Natl Acad Sci U S A (2004) 101:360-365

  4. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249