Stem-loop rno-mir-219a-1

Accession

MI0000959

Description

Rattus norvegicus rno-mir-219a-1 precursor miRNA

Literature search

28 open access papers mention rno-mir-219a-1
(236 sentences)

Sequence

15223 reads, 55 reads per million, 429 experiments

cugucccgggccgcggcuccUGAUUGUCCAAACGCAAUUCUcgagucucuggcuccggccgAGAGUUGCGUCUGGACGUCCCGagccgccgcccccaaaccucgaggggg
...((((((((.(((((((..(((.(((((.((((((((((((.(((.........))))))))))))))).))))))))..))))))).))))...........)))).

Structure

cug    -----------    c       cU   U     A            a   ucu 
   uccc           gggc gcggcuc  GAU GUCCA ACGCAAUUCUcg guc   g
   ||||           |||| |||||||  ||| ||||| |||||||||||| |||   g
   gggg           cccg cgccgaG  CUG CAGGU UGCGUUGAGAgc cgg   c
--g    agcuccaaacc    c       CC   -     C            -   ccu 

Annotation confidence High

Genome context

chr20: 3816158-3816267 [-]

Mature rno-miR-219a-5p

• Accession: MIMAT0000889
• Description: Rattus norvegicus rno-miR-219a-5p mature miRNA
• Sequence: 21 - UGAUUGUCCAAACGCAAUUCU - 41
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-219a-1-3p

• Accession: MIMAT0004741
• Description: Rattus norvegicus rno-miR-219a-1-3p mature miRNA
• Sequence: 62 - AGAGUUGCGUCUGGACGUCCCG - 83
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249