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miRBase |
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Stem-loop sequence rno-mir-219a-1 |
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Accession | MI0000959 (change log) | ||||
Description | Rattus norvegicus miR-219a-1 stem-loop | ||||
Gene family | MIPF0000044; mir-219 | ||||
Literature search |
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28 open access papers mention rno-mir-219a-1 | ||||
Stem-loop |
---------cuguccc c cu u a a ucu 5' gggc gcggcuc gau gucca acgcaauucucg guc g |||| ||||||| ||| ||||| |||||||||||| ||| g 3' cccg cgccgag cug caggu ugcguugagagc cgg c gggggagcuccaaacc c cc - c - ccu |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Database links |
Mature sequence rno-miR-219a-5p |
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Accession | MIMAT0000889 |
Previous IDs | rno-miR-219 |
Sequence |
21 - ugauuguccaaacgcaauucu - 41 |
Deep sequencing | 64975 reads, 372 experiments |
Evidence | experimental; cloned [1], SOLiD [2] |
Predicted targets |
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Mature sequence rno-miR-219a-1-3p |
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Accession | MIMAT0004741 |
Sequence |
62 - agaguugcgucuggacgucccg - 83 |
Deep sequencing | 3953 reads, 407 experiments |
Evidence | experimental; cloned [1], SOLiD [2] |
Predicted targets |
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References |
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1 |
PMID:17604727
"A mammalian microRNA expression atlas based on small RNA library sequencing"
Cell. 129:1401-1414(2007).
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2 |
PMID:20403161
"Small RNA expression and strain specificity in the rat"
BMC Genomics. 11:249(2010).
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