Accession
MI0000977
Description
Arabidopsis thaliana
ath-MIR169c precursor miRNA
Gene family
MIPF0000037;
MIR169_2
Literature search
34 open access papers mention ath-MIR169c
(157 sentences)
(157 sentences)
Sequence
ucguccauuaugaguauuaauuaugguuagggaaucuuacagaaugaaaaugaaggugugaauggauugucucaucuaaagccuugaaugugggaaaaaggccauuguuguuCAGCCAAGGAUGACUUGCCGGuagcuuguauuaugauuacucuauauucgauuuauauuauggagaugaugguuuauauauauuuacuuaucuacauaguuuuaguugauuuuuuuucguacguaauauaauacgaaaaaguauuuacuuauuuauauauguguguuggggcaagaaguguaaccaagcuagcccggcaagucaucuauggcuaugcaacugucucuuccucucauucuaggcuuacgaugacacguaaaaaaucccaaauaucacuaauaugauaugaauauggauga
((((((((.((..((((((((((((((..(((((((((.((.........)))))))...........((.(((((..((((((.(((((.(((((..((((....(((((..(((((.(((((((((((((((((((((....((.(((((((((((............))))))).)))).))((((((...((..((((.(((((((.....(((.(((.((((((((((..........)))))))))).))).)))........)))))).).))))..))...)))))).)))))))..)))))))))))))).)))))..))))).)))).)))))..))))).))))))..))))).))........))))....)))).)))).))))))..))))))))))
((((((((.((..((((((((((((((..(((((((((.((.........)))))))...........((.(((((..((((((.(((((.(((((..((((....(((((..(((((.(((((((((((((((((((((....((.(((((((((((............))))))).)))).))((((((...((..((((.(((((((.....(((.(((.((((((((((..........)))))))))).))).)))........)))))).).))))..))...)))))).)))))))..)))))))))))))).)))))..))))).)))).)))))..))))).))))))..))))).))........))))....)))).)))).))))))..))))))))))
Structure
u ga - - --ua aucuuacagaaugaaaaugaaggugugaauggauu c ua u -u aa cauu uC A -- uauuaugauuacucuauauucgauuuauauuauggagaugauggu aua ua u - ---guuuu u u cgua
ucguccau au guauua auua uggu ggga gu ucauc aagccu gaaug gggaa aggc guugu AGCCA GGAUGACUUGCCGG uagcuug uuauau uu cuua c uacaua agu gau uuuuuucgua a
|||||||| || |||||| |||| |||| |||| || ||||| |||||| ||||| ||||| |||| ||||| ||||| |||||||||||||| ||||||| |||||| || |||| | |||||| ||| ||| ||||||||||
aguaggua ua uauagu uaau acua cccu ca aguag uucgga cuuac uccuu ucug caacg ucggu ucuacugaacggcc aucgaac aaugug aa gggu g guguau uca uua gaaaaagcau u
- ag a c uaaa ---------------------------aaaaaaug c ca u uc -c ---u ua a cg --------------------------------------------c aag cg u u auauuuau u u aaua
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
This sequence is a predicted paralogue of the previously identified miR169 family [1], later experimentally verified [2]. It is predicted to target mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like transcription factors.
Genome context
chr5: 15870590-15871000 [-]
Database links
Mature ath-miR169c
| Accession | MIMAT0000907 |
| Description | Arabidopsis thaliana ath-miR169c mature miRNA |
| Sequence | 113 - CAGCCAAGGAUGACUUGCCGG - 133 |
| Evidence |
experimental
5'RACE [2], cloned [2], 454 [3-4], MPSS [3], Illumina [5] |
References
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