Accession
MI0000980
Description
Arabidopsis thaliana
ath-MIR169f precursor miRNA
Gene family
MIPF0000037;
MIR169_2
Literature search
34 open access papers mention ath-MIR169f
(157 sentences)
(157 sentences)
Sequence
gggucuugcaugaaggaauaacgaauggaauUGAGCCAAGGAUGACUUGCCGguuuaaacccaaccgguuuaugaccauugauuuggucucauucacaaucuguugauucgugucugGCAAGUUGACCUUGGCUCUGCuucguucucuauucuuccauguuagauuc
((((((.(((((.(((((((..(((((((...(((((((((..((((((((((..((((((.....)))))).(((((......))))).....(((((((....)))).))).))))))))))..)))))))))...)))))))..))))))).))))).))))))
((((((.(((((.(((((((..(((((((...(((((((((..((((((((((..((((((.....)))))).(((((......))))).....(((((((....)))).))).))))))))))..)))))))))...)))))))..))))))).))))).))))))
Structure
u a ac auU AU uuuaaacccaaccgguuuaugaccauugauuuggucucauu - u
gggucu gcaug aggaaua gaaugga GAGCCAAGG GACUUGCCGg cac aauc g
|||||| ||||| ||||||| ||||||| ||||||||| |||||||||| ||| ||||
cuuaga uguac uucuuau cuugcuu CUCGGUUCC UUGAACGguc gug uuag u
u c cu CGU AG ----------------------------------------u c u
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
This sequence is a predicted paralogue of the previously identified miR169 family [1], later experimentally verified [2]. It is predicted to target mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like transcription factors.
Genome context
chr3: 4805684-4805850 [-]
Database links
Mature ath-miR169f-5p
| Accession | MIMAT0000910 |
| Description | Arabidopsis thaliana ath-miR169f-5p mature miRNA |
| Sequence | 32 - UGAGCCAAGGAUGACUUGCCG - 52 |
| Evidence |
experimental
cloned [2], 454 [3-4], MPSS [3], Illumina [5] |
Mature ath-miR169f-3p
| Accession | MIMAT0031898 |
| Description | Arabidopsis thaliana ath-miR169f-3p mature miRNA |
| Sequence | 118 - GCAAGUUGACCUUGGCUCUGC - 138 |
| Evidence | not_experimental |
References
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