Accession
MI0000990
Description
Arabidopsis thaliana
ath-MIR171c precursor miRNA
Gene family
MIPF0000030;
MIR171_1
Literature search
25 open access papers mention ath-MIR171c
(112 sentences)
(112 sentences)
Sequence
ugagcgcacuaucggacaucaaauacgAGAUAUUGGUGCGGUUCAAUCagaaaaccguacucuuuuguuuuaaagaucgguuuauuugaUUGAGCCGUGCCAAUAUCACGcguuua
(((((((.....((...........)).(((((((((((((((((((((((((((((...(((((......))))).)))))).)))))))))))))))))))))))..)))))))
(((((((.....((...........)).(((((((((((((((((((((((((((((...(((((......))))).)))))).)))))))))))))))))))))))..)))))))
Structure
acuaucggacaucaaauacgA - uac ug
ugagcgc GAUAUUGGUGCGGUUCAAUCaga aaaccg ucuuu u
||||||| ||||||||||||||||||||||| |||||| |||||
auuugcG CUAUAACCGUGCCGAGUUaguuu uuuggc agaaa u
-------------------CA a --u uu
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
This sequence is a predicted paralogue of the previously identified miR171 family [1], later experimentally verified [2,3]. It is predicted to target mRNAs coding for SCARECROW-like transcription factors.
Genome context
chr1: 22930089-22930204 [-]
Database links
Mature ath-miR171c-3p
| Accession | MIMAT0000921 |
| Description | Arabidopsis thaliana ath-miR171c-3p mature miRNA |
| Sequence | 90 - UUGAGCCGUGCCAAUAUCACG - 110 |
| Evidence |
experimental
cloned [2-3], Northern [2], 5'RACE [3], 454 [4-5], MPSS [4] |
Mature ath-miR171c-5p
| Accession | MIMAT0031900 |
| Description | Arabidopsis thaliana ath-miR171c-5p mature miRNA |
| Sequence | 28 - AGAUAUUGGUGCGGUUCAAUC - 48 |
| Evidence | not_experimental |
References
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