Accession
MI0001005
Description
Arabidopsis thaliana
ath-MIR394a precursor miRNA
Gene family
MIPF0000100;
MIR394
Literature search
12 open access papers mention ath-MIR394a
(24 sentences)
(24 sentences)
Sequence
cuuacagucaucuUUGGCAUUCUGUCCACCUCCuucuauacauauaugcauguguauauauauaugcguuucgugugaaagaaggagguggguauacugccaauagagaucuguuag
((.((((((.(((((((((...(((((((((((((((.(((((..((((((((((....))))))))))...)))))..)))))))))))))))...)))))).))))).)))).))
((.((((((.(((((((((...(((((((((((((((.(((((..((((((((((....))))))))))...)))))..)))))))))))))))...)))))).))))).)))).))
Structure
u - a - UUC -a -au a cu acag uc ucu UUGGCA UGUCCACCUCCuucu uacau augcaugugu u || |||| || ||| |||||| ||||||||||||||| ||||| |||||||||| ga uguc ag aga aaccgu auggguggaggaaga gugug ugcguauaua a u u - u cau aa cuu u
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
This sequence belongs to the miR394 family of miRNAs, which are predicted to target mRNAs coding for F-box proteins [1].
Genome context
chr1: 7058194-7058310 [+]
Database links
Mature ath-miR394a
| Accession | MIMAT0000936 |
| Description | Arabidopsis thaliana ath-miR394a mature miRNA |
| Sequence | 14 - UUGGCAUUCUGUCCACCUCC - 33 |
| Evidence |
experimental
5'RACE [1-2], Northern [1], PCR [1], 454 [3], MPSS [3] |
References
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