Accession
MI0001014
Description
Arabidopsis thaliana
ath-MIR396b precursor miRNA
Gene family
MIPF0000047;
MIR396
Literature search
26 open access papers mention ath-MIR396b
(271 sentences)
(271 sentences)
Sequence
ggucauacuuUUCCACAGCUUUCUUGAACUUucuuuuucauuuccauuguuuuuuucuuaaacaaaaguaagaagaaaaaaaacuuuaagauuaagcauuuuggaaGCUCAAGAAAGCUGUGGGAAAacaugaca
.(((((..(((((((((((((((((((.(((((((..((..........(((((((((((........)))))))))))..........))..))).......)))).)))))))))))))))))))..))))).
.(((((..(((((((((((((((((((.(((((((..((..........(((((((((((........)))))))))))..........))..))).......)))).)))))))))))))))))))..))))).
Structure
g ac A ------- uu auuuccauug aac gucau uuUUCCACAGCUUUCUUGA CUUu cuu uc uuuuuuucuua a ||||| ||||||||||||||||||| |||| ||| || ||||||||||| cagua AAAGGGUGUCGAAAGAACU Gaag gaa ag aaaagaagaau a a ca C guuuuac uu aauuucaaaa gaa
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
This sequence belongs to the miR396 family of miRNAs, which are predicted to target mRNAs coding for Growth Regulating Factor (GRF) transcription factors, rhodenase-like proteins, and kinesin-like protein B [1]. The mature sequence reported in [2] is offset by 1 nt with respect to the sequence shown here.
Genome context
chr5: 13611798-13611932 [+]
Database links
Mature ath-miR396b-5p
| Accession | MIMAT0000945 |
| Description | Arabidopsis thaliana ath-miR396b-5p mature miRNA |
| Sequence | 11 - UUCCACAGCUUUCUUGAACUU - 31 |
| Evidence |
experimental
5'RACE [1], Northern [1-2], PCR [1], 454 [3], MPSS [3] |
Mature ath-miR396b-3p
| Accession | MIMAT0031909 |
| Description | Arabidopsis thaliana ath-miR396b-3p mature miRNA |
| Sequence | 107 - GCUCAAGAAAGCUGUGGGAAA - 127 |
| Evidence | not_experimental |
References
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