Accession
MI0001017
Description
Arabidopsis thaliana
ath-MIR398a precursor miRNA
Gene family
MIPF0000107;
MIR398
Literature search
31 open access papers mention ath-MIR398a
(119 sentences)
(119 sentences)
Sequence
ugaaauuucaAAGGAGUGGCAUGUGAACACAuauccuaugguuucuucaaauuuccauugaaaccauugaguuuUGUGUUCUCAGGUCACCCCUUugaaucuccc
......((((((((.(((((.((.(((((((..((..((((((((..............)))))))).))....))))))).)).))))).))))))))......
......((((((((.(((((.((.(((((((..((..((((((((..............)))))))).))....))))))).)).))))).))))))))......
Structure
ugaaau A A U --ua cu uucaaa
uucaAAGG GUGGC UG GAACACA uc augguuuc u
|||||||| ||||| || ||||||| || ||||||||
aaguUUCC CACUG AC CUUGUGU ag uaccaaag u
cccucu C G U uuug -u uuaccu
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
This sequence belongs to the miR398 family of miRNAs, which are predicted to target mRNAs coding for copper superoxide dismutases and cytochrome C oxidase subunit V [1].
Genome context
chr2: 1040938-1041042 [+]
Database links
Mature ath-miR398a-3p
| Accession | MIMAT0000948 |
| Description | Arabidopsis thaliana ath-miR398a-3p mature miRNA |
| Sequence | 75 - UGUGUUCUCAGGUCACCCCUU - 95 |
| Evidence |
experimental
5'RACE [1], Northern [1], PCR [1], cloned [2], 454 [3-4], MPSS [3] |
Mature ath-miR398a-5p
| Accession | MIMAT0031910 |
| Description | Arabidopsis thaliana ath-miR398a-5p mature miRNA |
| Sequence | 11 - AAGGAGUGGCAUGUGAACACA - 31 |
| Evidence |
experimental
Illumina [5] |
References
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