Accession
MI0001024
Description
Arabidopsis thaliana
ath-MIR399e precursor miRNA
Literature search
37 open access papers mention ath-MIR399e
(180 sentences)
(180 sentences)
Sequence
4536
reads,
13.0
reads per million, 164 experiments
gaaagcauuacaGGGCGAAUCCUCUAUUGGCAGUggaaguugaugacccuuauauguuauuuucucaucauuuuccucUGCCAAAGGAGAUUUGCCUCGcaaugcuuca
(((.(((((.(.(((((((((.(((.(((((((.(((((.((((((..................)))))).))))).))))))).)))))))))))).).)))))))).
(((.(((((.(.(((((((((.(((.(((((((.(((((.((((((..................)))))).))))).))))))).)))))))))))).).)))))))).
Structure
- a a a C A U u cccuuaua gaa gcauu c GGGCGAAUC UCU UUGGCAG ggaag ugauga u ||| ||||| | ||||||||| ||| ||||||| ||||| |||||| cuu cguaa G UCCGUUUAG AGG AACCGUc ccuuu acuacu g a - c C - A u u cuuuuauu
Annotation confidence
High
Do you think this miRNA is real?
Comments
This sequence belongs to the miR399 family of miRNAs, which are predicted to target mRNAs coding for a phosphatase transporter [1].
Genome context
chr2: 14443504-14443612 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ath-MIR399e
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ath-miR399e-5p
| Accession | MIMAT0053831 |
| Description | Arabidopsis thaliana ath-miR399e-5p mature miRNA |
| Sequence | 13 - GGGCGAAUCCUCUAUUGGCAGU - 34 |
| Evidence |
experimental
unknown |
Mature ath-miR399e-3p
| Accession | MIMAT0000955 |
| Description | Arabidopsis thaliana ath-miR399e-3p mature miRNA |
| Sequence | 79 - UGCCAAAGGAGAUUUGCCUCG - 99 |
| Evidence |
experimental
PCR [1], MPSS [2], Illumina [3] |
References
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