miRBase entry: osa-MIR394

Stem-loop osa-MIR394


Accession
MI0001027
Description
Oryza sativa osa-MIR394 precursor miRNA
Gene family
MIPF0000100; MIR394

Literature search
26 open access papers mention osa-MIR394
(59 sentences)

Sequence

104 reads, 78 reads per million, 2 experiments
uacugagaguucuUUGGCAUUCUGUCCACCUCCuugucgaauccucagagacagaaaucucauaucuguugaucuuggaggugggcauacugccaauggagcuguguagg
..((((.((((((((((((...(((((((((((..(((((.......((((......)))).......)))).)..)))))))))))...)))))).)))))).).))).

Structure
ua   - g      -      UUC           uu -    auccuca    ca 
  cug a aguucu UUGGCA   UGUCCACCUCC  g ucga       gaga  g
  ||| | |||||| ||||||   |||||||||||  | ||||       ||||   
  gau u ucgagg aaccgu   acggguggagg  c aguu       cucu  a
-g   g g      u      cau           uu u    gucuaua    aa 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This sequence belongs to the miR394 family of miRNAs, which are predicted to target mRNAs coding for F-box proteins [1].

Genome context
Chr2: 27148154-27148263 [+]

Database links

Mature osa-miR394

Accession MIMAT0000958
Description Oryza sativa osa-miR394 mature miRNA
Sequence 14 - UUGGCAUUCUGUCCACCUCC - 33
Evidence not_experimental
Database links

References

  1. PubMed ID: 15200956
    Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    "Jones-Rhoades MW, Bartel DP"
    "Mol Cell (2004) 14:787-799