miRBase entry: osa-MIR395e

Stem-loop osa-MIR395e


Accession
MI0001030
Description
Oryza sativa osa-MIR395e precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
39 open access papers mention osa-MIR395e
(168 sentences)

Sequence

26 reads, 20 reads per million, 2 experiments
guauuaucgagaguucccuucaaccacuucacguggcacuguuucaaggccuauuguGUGAAGUGUUUGGGGGAACUCucgauaucac
((..(((((((((((((((.(((.(((((((((.(((.((......))))).....))))))))).))))))))))))))))))..))

Structure
  au               u   c         ----u   a  gu 
gu  uaucgagaguucccu caa cacuucacg     ggc cu  u
||  ||||||||||||||| ||| |||||||||     ||| ||   
ca  auagcuCUCAAGGGG GUU GUGAAGUGu     ccg ga  u
  cu               -   U         guuau   -  ac 


Annotation confidence Not enough data
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Comments
This sequence belongs to the miR395 family of miRNAs, which are predicted to target mRNAs coding for ATP sulphurylases [1]. Four clusters of rice miR395 genes are found on chromosomes 4, 8 and 9, and the genes have been renamed to reflect this arrangement [2].

Genome context
Chr4: 31804912-31804999 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from osa-MIR395e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR395e

Accession MIMAT0000961
Description Oryza sativa osa-miR395e mature miRNA
Sequence 58 - GUGAAGUGUUUGGGGGAACUC - 78
Evidence not_experimental
Database links

References

  1. PubMed ID: 15200956
    Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    "Jones-Rhoades MW, Bartel DP"
    "Mol Cell (2004) 14:787-799

  2. PubMed ID: 16117853
    Molecular evolution of the rice miR395 gene family
    "Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L"
    "Cell Res (2005) 15:631-638