Accession
MI0001032
Description
Oryza sativa
osa-MIR395h precursor miRNA
Gene family
MIPF0000016;
MIR395
Literature search
39 open access papers mention osa-MIR395h
(173 sentences)
(173 sentences)
Sequence
26
reads,
20
reads per million, 2 experiments
uuguuaccuggaguuuccucaacacacuucacaucugcuaggcccuauuacaauugcgcaauguggagucugcaauugguaGUGAAGUGUUUGGGGGAACUCuagguggcac
.(((((((((((((((((((((.(((((((((((((((.((((((((((.(......).)))).)).)))))))...))).)))))))))))))))))))))))))))))).
.(((((((((((((((((((((.(((((((((((((((.((((((((((.(......).)))).)).)))))))...))).)))))))))))))))))))))))))))))).
Structure
u c - --- u - - a aa uguuaccuggaguuuccucaa acacuucac auc ugc aggc cc uauu c u ||||||||||||||||||||| ||||||||| ||| ||| |||| || |||| | acgguggauCUCAAGGGGGUU UGUGAAGUG ugg acg ucug gg guaa g u c - a uua - a u c cg
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
This sequence belongs to the miR395 family of miRNAs, which are predicted to target mRNAs coding for ATP sulphurylases [1]. Four clusters of rice miR395 genes are found on chromosomes 4, 8 and 9, and the genes have been renamed to reflect this arrangement [2].
Genome context
Chr8: 3299144-3299255 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from osa-MIR395h
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature osa-miR395h
| Accession | MIMAT0000963 |
| Description | Oryza sativa osa-miR395h mature miRNA |
| Sequence | 82 - GUGAAGUGUUUGGGGGAACUC - 102 |
| Evidence | not_experimental |
| Database links |
|
References
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