miRBase entry: osa-MIR395k

Stem-loop osa-MIR395k


Accession
MI0001035
Description
Oryza sativa osa-MIR395k precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
39 open access papers mention osa-MIR395k
(167 sentences)

Sequence

25 reads, 19 reads per million, 2 experiments
guuuuaucgggaguuuccuucaagcacuucacguagagcuuucuauugauauggagcuuuggaacaauGUGAAGUGUUUGGGGGAACUCuugauaccaa
....(((((((((((.(((((((((((((((((((((((..(((((....))))))))))......)))))))))))))))))))))))))))))....

Structure
guuu           u                  ------     uu     u 
    uaucgggaguu ccuucaagcacuucacgu      agagc  ucuau g
    ||||||||||| ||||||||||||||||||      |||||  |||||  
    auaguuCUCAA GGGGGUUUGUGAAGUGua      uuucg  aggua a
aacc           -                  acaagg     --     u 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This sequence belongs to the miR395 family of miRNAs, which are predicted to target mRNAs coding for ATP sulphurylases [1]. Four clusters of rice miR395 genes are found on chromosomes 4, 8 and 9, and the genes have been renamed to reflect this arrangement [2].

Genome context
Chr8: 3299652-3299750 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from osa-MIR395k
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR395k

Accession MIMAT0000966
Description Oryza sativa osa-miR395k mature miRNA
Sequence 69 - GUGAAGUGUUUGGGGGAACUC - 89
Evidence not_experimental
Database links

References

  1. PubMed ID: 15200956
    Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    "Jones-Rhoades MW, Bartel DP"
    "Mol Cell (2004) 14:787-799

  2. PubMed ID: 16117853
    Molecular evolution of the rice miR395 gene family
    "Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L"
    "Cell Res (2005) 15:631-638