Stem-loop sequence osa-MIR396c

Accession MI0001048
Description Oryza sativa miR396c stem-loop
Gene family MIPF0000047; MIR396
Stem-loop 
u     gc                   a     -     --g    a   -----a     auu    ga  gau 
 gccau  cuuuccacagcuuucuuga cuucu cuugu   ccuc cuc      cuuuc   acug  ga   a
 |||||  ||||||||||||||||||| ||||| |||||   |||| |||      |||||   ||||  ||    
 cggua  gaagggugucgaaagaacu ggaga gaacg   ggag ggg      gaagg   ugac  cu   u
a     aa                   g     a     uga    a   auauuc     ---    ua  acg
Get sequence
Deep sequencing
2114 reads, 4 experiments
Comments

This sequence belongs to the miR396 family of miRNAs, which are predicted to target mRNAs coding for Growth Regulating Factor (GRF) transcription factors, rhodenase-like proteins, and kinesin-like protein B [1].

Genome context
Coordinates (MSU7) Overlapping transcripts
Chr2: 34287873-34288013 [-]
intergenic
Clustered miRNAs
< 10kb from osa-MIR396c
osa-MIR396c Chr2: 34287873-34288013 [-]
osa-MIR396a Chr2: 34280384-34280537 [+]

Mature sequence osa-miR396c-5p

Accession MIMAT0000979
Previous IDs osa-miR396c
Sequence

11 -  

uuccacagcuuucuugaacuu

 - 31

Get sequence
Deep sequencing 1028 reads, 4 experiments
Evidence by similarity; MI0001014

Mature sequence osa-miR396c-3p

Accession MIMAT0022865
Sequence

113 -  

ggucaagaaagcugugggaag

 - 133

Get sequence
Deep sequencing 1062 reads, 3 experiments
Evidence experimental; Solexa [2]

References

1
PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" Jones-Rhoades MW, Bartel DP Mol Cell. 14:787-799(2004).
2
PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors" Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y PLoS Pathog. 7:e1002176(2011).