Stem-loop sequence osa-MIR398a

Accession

MI0001051 (change log)

Description

Oryza sativa miR398a stem-loop

Gene family

MIPF0000107; MIR398

Literature search

37 open access papers mention osa-MIR398a
(104 sentences)

Stem-loop

   gcu           a   gua            g   caauacaauguauggugagc 
5'    gaacccagagg gug   cugagaacacag ugc                    u
      ||||||||||| |||   |||||||||||| |||                     
3'    uuuggguuucc cac   gacucuuguguc aug                    a
   uuc           c   -ug            a   ucuuaaugagguaauauguc 

Deep sequencing

18 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Comments

This sequence belongs to the miR398 family of miRNAs, which are predicted to target mRNAs coding for copper superoxide dismutases and cytochrome C oxidase subunit V [1].

Genome context

• Coordinates (MSU7): Chr10: 9216250-9216364 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001051

Mature sequence osa-miR398a

• Accession: MIMAT0000982
• Sequence: 85 - uguguucucaggucaccccuu - 105
• Deep sequencing: 7 reads, 2 experiments
• Evidence: by similarity; MI0001017

References

1. PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" Jones-Rhoades MW, Bartel DP Mol Cell. 14:787-799(2004).