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miRBase |
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Stem-loop sequence osa-MIR398a |
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Accession | MI0001051 (change log) | ||||
Description | Oryza sativa miR398a stem-loop | ||||
Gene family | MIPF0000107; MIR398 | ||||
Literature search |
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37 open access papers mention osa-MIR398a | ||||
Stem-loop |
gcu a gua g caauacaauguauggugagc 5' gaacccagagg gug cugagaacacag ugc u ||||||||||| ||| |||||||||||| ||| 3' uuuggguuucc cac gacucuuguguc aug a uuc c -ug a ucuuaaugagguaauauguc |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Comments |
This sequence belongs to the miR398 family of miRNAs, which are predicted to target mRNAs coding for copper superoxide dismutases and cytochrome C oxidase subunit V [1]. |
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Genome context |
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Database links |
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Mature sequence osa-miR398a |
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Accession | MIMAT0000982 |
Sequence |
85 - uguguucucaggucaccccuu - 105 |
Deep sequencing | 7 reads, 2 experiments |
Evidence | by similarity; MI0001017 |
References |
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1 |
PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
Mol Cell. 14:787-799(2004).
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