miRBase entry: osa-MIR398a

Stem-loop osa-MIR398a


Accession
MI0001051
Description
Oryza sativa osa-MIR398a precursor miRNA
Gene family
MIPF0000107; MIR398

Literature search
37 open access papers mention osa-MIR398a
(104 sentences)

Sequence

10 reads, 11 reads per million, 2 experiments
gcugaacccagaggagugguacugagaacacaggugccaauacaauguauggugagcuacuguauaauggaguaauucuguaacUGUGUUCUCAGGUCACCCCUUuggguuucuu
...(((((((((((.((((..((((((((((((..((((.(((...)))))))(((.((((.((...)).)))).))).....)))))))))))).)))).)))))))))))...

Structure
gcu           a    ua            gugccaauacaauguauggu   c    g  u 
   gaacccagagg gugg  cugagaacacag                    gag uacu ua  
   ||||||||||| ||||  ||||||||||||                    ||| |||| || a
   uuuggguUUCC CACU  GACUCUUGUGUc                    cuu auga gu  
uuc           C    -G            ---------------aaugu   a    g  a 


Annotation confidence Not enough data
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Comments
This sequence belongs to the miR398 family of miRNAs, which are predicted to target mRNAs coding for copper superoxide dismutases and cytochrome C oxidase subunit V [1].

Genome context
Chr10: 9216250-9216364 [-]

Database links

Mature osa-miR398a

Accession MIMAT0000982
Description Oryza sativa osa-miR398a mature miRNA
Sequence 85 - UGUGUUCUCAGGUCACCCCUU - 105
Evidence not_experimental

References

  1. PubMed ID: 15200956
    Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    "Jones-Rhoades MW, Bartel DP"
    "Mol Cell (2004) 14:787-799