Stem-loop osa-MIR399f

Accession

MI0001058

Description

Oryza sativa osa-MIR399f precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

58 open access papers mention osa-MIR399f
(223 sentences)

Sequence

ugguggauuaccgggccaugucuccuugggcagaggugaucagauugcacacuucacuucaaccucuugcucuagcuuguucucucUGCCAAAGGAGAUUUGCCCAGcaauccacau
..(((((((.(.((((...((((((((.((((((((.(((.((...(((..................))).....)).))).)))))))).))))))))..)))).).)))))))..

Structure

ug       a c    cau        g        u   c  --auu   cacuucac 
  guggauu c gggc   gucuccuu ggcagagg gau ag     gca        u
  ||||||| | ||||   |||||||| |||||||| ||| ||     |||         
  caccuaa G CCCG   UAGAGGAA CCGUcucu uug uc     cgu        u
ua       c A    -UU        A        c   u  gaucu   ucuccaac 

Annotation confidence Not enough data

Comments

This sequence belongs to the miR399 family of miRNAs, which are predicted to target mRNAs coding for a phosphatase transporter [1].

Genome context

Chr6: 20888631-20888747 [-]

Mature osa-miR399f

• Accession: MIMAT0000989
• Description: Oryza sativa osa-miR399f mature miRNA
• Sequence: 87 - UGCCAAAGGAGAUUUGCCCAG - 107
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799