Stem-loop osa-MIR399g

Accession

MI0001059

Description

Oryza sativa osa-MIR399g precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

58 open access papers mention osa-MIR399g
(226 sentences)

Sequence

augugcauugcagggcaacuacuccauuggcagagggauggauuggauauggauauggcugaugcuuccauuugaucccaucccuaucUGCCAAAGGAGAUUUGCCCAGcgauucacuc
..(((.(((((.((((((.(.((((.(((((((((((((((..(.((.(((((...(((....)))))))))).)..)))))))..)))))))).))))).)))))).))))).)))..

Structure

au   c     a      c a    a        --       au g  u     uau   u 
  gug auugc gggcaa u cucc uuggcaga  gggaugg  u ga augga   ggc g
  ||| ||||| |||||| | |||| ||||||||  |||||||  | || |||||   |||  
  cac uagcG CCCGUU A GAGG AACCGUcu  cccuacc  a uu uaccu   ucg a
cu   u     A      U -    A        au       cu g  -     ---   u 

Annotation confidence Not enough data

Comments

This sequence belongs to the miR399 family of miRNAs, which are predicted to target mRNAs coding for a phosphatase transporter [1].

Genome context

Chr2: 7675284-7675402 [+]

Mature osa-miR399g

• Accession: MIMAT0000990
• Description: Oryza sativa osa-miR399g mature miRNA
• Sequence: 89 - UGCCAAAGGAGAUUUGCCCAG - 109
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799