miRBase entry: ath-MIR405a

Stem-loop ath-MIR405a


Accession
MI0001074
Description
Arabidopsis thaliana ath-MIR405a precursor miRNA
Gene family
MIPF0000198; MIR405

Literature search
1 open access papers mention ath-MIR405a
(1 sentences)

Sequence

ucaaaauggguaacccaacccaacccaacucauaaucaaaugaguuuaugauuaaaugaguuauggguugacccaacucauuuuguuaaAUGAGUUGGGUCUAACCCAUAACUcauuucauuugauggguugaguuguuaaauggguuaaccauuua
...((((((.(((((((...((((.(((((((...((((((((...........(((((((((((((((((((((((((((((....)))))))))))))).)))))))))))))))))))))))))))))).)))).....))))))).)))))).

Structure
uca      g       --acc    c       uaa        guuuaugauua               -              u 
   aaaugg uaaccca     caac caacuca   ucaaauga           aaugaguuauggguu gacccaacucauuu g
   |||||| |||||||     |||| |||||||   ||||||||           ||||||||||||||| ||||||||||||||  
   uuuacc auugggu     guug guugggu   aguuuacu           uuacUCAAUACCCAA CUGGGUUGAGUAaa u
--a      a       aaauu    a       ---        -----------               U              u 


Annotation confidence Not enough data
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Genome context
chr2: 9634957-9635113 [-]

Database links

Mature ath-miR405a

Accession MIMAT0001006
Description Arabidopsis thaliana ath-miR405a mature miRNA
Sequence 90 - AUGAGUUGGGUCUAACCCAUAACU - 113
Evidence experimental
cloned [1]

References

  1. PubMed ID: 15258262
    Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
    "Sunkar R, Zhu JK"
    "Plant Cell (2004) 16:2001-2019