Stem-loop sequence ath-MIR406

Accession

MI0001078 (change log)

Description

Arabidopsis thaliana miR406 stem-loop

Literature search

1 open access papers mention ath-MIR406
(1 sentences)

Stem-loop

   uaaa    uaa          uca      agcacauaucaau    --       a     c    auuaguucuuaaa          agacaguaacuauucaaauagaaug 
5'     gucu   uuuuuaguua   cgauuu             cuau  agauuug uuuuu uuuu             uuuugauuug                         c
       ||||   ||||||||||   ||||||             ||||  ||||||| ||||| ||||             ||||||||||                          
3'     uagg   aaaaaucaau   gcuaaa             gaua  ucugagc aaaaa aaaa             aaaacuaagc                         u
   --gg    ---          -ua      ----------aau    cu       -     a    -------------          aaagaaagccuaagaccuaauguua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr1: 19430078-19430277 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001078

Mature sequence ath-miR406

• Accession: MIMAT0001009
• Sequence: 107 - uagaaugcuauuguaauccag - 127
• Evidence: experimental; cloned [1]

References

1. PMID:15258262 "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis" Sunkar R, Zhu JK Plant Cell. 16:2001-2019(2004).