Accession
MI0001080
Description
Arabidopsis thaliana
ath-MIR408 precursor miRNA
Gene family
MIPF0000102;
MIR408
Literature search
24 open access papers mention ath-MIR408
(70 sentences)
(70 sentences)
Sequence
aagguuagauugguauugcaaugaaagaagacaaagcgguaaugagagagagACAGGGAACAAGCAGAGCAUGgauugaguuuacuaaaacauuaaacgacucuguuuugucucuacccAUGCACUGCCUCUUCCCUGGCucccucuuuuuuucucuauauuucucucucuccuuucauuucacagcuuucaauggaauuuuauugcuacugcuaacg
...(((((...((((..(((((((((......(((((.((((((((((((((((((((((...((((.((((((...(((...((.((((((...........)))))))))))...)))))).))))...)))))))..........................))))))))...)))))..)).)))))........))))))))))))).))))).
...(((((...((((..(((((((((......(((((.((((((((((((((((((((((...((((.((((((...(((...((.((((((...........)))))))))))...)))))).))))...)))))))..........................))))))))...)))))..)).)))))........))))))))))))).))))).
Structure
aag auu uu --gaagac g -- --- -------------------------- CAA A auu uuu u uuaa guuag ggua gcaaugaaa aaagc gu aauga gagagagA CAGGGAA GCAG GCAUGg gag ac aaaaca a ||||| |||| ||||||||| ||||| || ||||| |||||||| ||||||| |||| |||||| ||| || |||||| c caauc ucau cguuauuuu uuucg ca uuacu cucucucu GUCCCUU CGUC CGUAcc cuc ug uuuugu g --g --g -- aagguaac a cu uuc cuuuauaucucuuuuuuucucccuCG CUC A cau --- - cuca
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
chr2: 19319814-19320031 [+]
Database links
Mature ath-miR408-3p
| Accession | MIMAT0001011 |
| Description | Arabidopsis thaliana ath-miR408-3p mature miRNA |
| Sequence | 120 - AUGCACUGCCUCUUCCCUGGC - 140 |
| Evidence |
experimental
cloned [1], Northern [1], 454 [2-3], MPSS [2], Illumina [4] |
Mature ath-miR408-5p
| Accession | MIMAT0031915 |
| Description | Arabidopsis thaliana ath-miR408-5p mature miRNA |
| Sequence | 53 - ACAGGGAACAAGCAGAGCAUG - 73 |
| Evidence |
experimental
Illumina [5] |
References
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