Stem-loop ath-MIR319c

Accession

MI0001086

Description

Arabidopsis thaliana ath-MIR319c precursor miRNA

Literature search

40 open access papers mention ath-MIR319c
(266 sentences)

Sequence

4969540 reads, 14565.0 reads per million, 185 experiments

uagauauagaagGAGAUUCUUUCAGUCCAGUCAuggauagaaaaagaagaggguagaaauAUCUGCCGACUCAUCCAUCCAaacacucgugguagagaaacgauaaauuuaaaccgcagugacugUGUGAAUGAUGCGGGAGAUAUuuuugauccuucuuuaucuguguUUGGACUGAAGGGAGCUCCUUCuuuuucua
((((...((((((((.((((((((((((((.((((((((....((((((.((.(((((((((((.(((..((((.(((.((..((((.(((((..(((.........)))..)))))))))..)).))).))))..))).))))))))))).)))))))))))))))).)))))))))))))).))))))))...))))

Structure

    uau        A              U        gaaa      a  g           G   AC    C   C  aa    c     ag   aac 
uaga   agaagGAG UUCUUUCAGUCCAG CAuggaua    aagaag gg uagaaauAUCU CCG  UCAU CAU CA  cacu guggu  aga   g
||||   |||||||| |||||||||||||| ||||||||    |||||| || ||||||||||| |||  |||| ||| ||  |||| |||||  |||   a
aucu   uCUUCCUC AGGGAAGUCAGGUU gugucuau    uucuuc cu guuuuUAUAGA GGC  AGUA GUG gu  guga cgcca  uuu   u
    uuu        G              u        ----      -  a           G   GU    A   U  ca    -     aa   aaa 

Annotation confidence High

Comments

This sequence is a predicted paralogue of the previously identified miR159/JAW family [1], subsequently verified in [2,3]. It is predicted to target mRNAs coding for MYB and TCP transcription factors.

Genome context

chr2: 17029701-17029899 [+]

Mature ath-miR319c-5p.1

• Accession: MIMAT0053846
• Description: Arabidopsis thaliana ath-miR319c-5p.1 mature miRNA
• Sequence: 13 - GAGAUUCUUUCAGUCCAGUCA - 33
• Evidence: experimental ; unknown

Mature ath-miR319c-5p.2

• Accession: MIMAT0060851
• Description: Arabidopsis thaliana ath-miR319c-5p.2 mature miRNA
• Sequence: 61 - AUCUGCCGACUCAUCCAUCCA - 81
• Evidence: experimental ; Illumina [1]

Mature ath-miR319c-3p.1

• Accession: MIMAT0001016
• Description: Arabidopsis thaliana ath-miR319c-3p.1 mature miRNA
• Sequence: 170 - UUGGACUGAAGGGAGCUCCUUC - 191
• Evidence: experimental ; cloned [2], Northern [2], 454 [3]

Mature ath-miR319c-3p.2

• Accession: MIMAT0060850
• Description: Arabidopsis thaliana ath-miR319c-3p.2 mature miRNA
• Sequence: 126 - UGUGAAUGAUGCGGGAGAUAU - 146
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


2. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799


3. PubMed ID: 15258262
   Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
   "Sunkar R, Zhu JK"
   "Plant Cell (2004) 16:2001-2019