Accession
MI0001089
Description
Arabidopsis thaliana
ath-MIR172e precursor miRNA
Gene family
MIPF0000035;
MIR172
Literature search
54 open access papers mention ath-MIR172e
(301 sentences)
(301 sentences)
Sequence
guagucgcagauGCAGCACCAUUAAGAUUCACaagagaugugguucccuuugcuuucgccucucgauccgcagaaaaggguuccuuaucgagugGGAAUCUUGAUGAUGCUGCAUcagcaaauac
(((...((.(((((((((.(((((((((((.((...((((.((..((((((((..(((.....)))...)))...)))))..)).))))...)).))))))))))).))))))))).))...)))
(((...((.(((((((((.(((((((((((.((...((((.((..((((((((..(((.....)))...)))...)))))..)).))))...)).))))))))))).))))))))).))...)))
Structure
guc a C A aga u uu --- -uu c gua gc gauGCAGCA CAUUAAGAUUC Ca gaug gg cccuu ugc ucg c ||| || ||||||||| ||||||||||| || |||| || ||||| ||| ||| u cau cg cUACGUCGU GUAGUUCUAAG gu cuau cc gggaa acg agc c aaa a A G gag u uu aag ccu u
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
This sequence is a predicted paralogue of the previously identified miR172 family [1]. It is predicted to target mRNAs coding for APETALA2-like transcription factors.
Genome context
chr5: 23988472-23988596 [+]
Database links
Mature ath-miR172e-3p
| Accession | MIMAT0001019 |
| Description | Arabidopsis thaliana ath-miR172e-3p mature miRNA |
| Sequence | 95 - GGAAUCUUGAUGAUGCUGCAU - 115 |
| Evidence |
experimental
5'RACE [2], 454 [3], Illumina [4] |
Mature ath-miR172e-5p
| Accession | MIMAT0031918 |
| Description | Arabidopsis thaliana ath-miR172e-5p mature miRNA |
| Sequence | 13 - GCAGCACCAUUAAGAUUCAC - 32 |
| Evidence | not_experimental |
References
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