Stem-loop osa-MIR156k

Accession

MI0001090

Description

Oryza sativa osa-MIR156k precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

122 open access papers mention osa-MIR156k
(662 sentences)

Sequence

1268 reads, 871 reads per million, 2 experiments

uugagagugaUGACAGAAGAGAGAGAGCACAacccggcagcagcgacgacggcggucgcuucugccagggccgugugcucucugaucuaucugucauugccgucca
..((..((((((((((((((.((((((((((.((((((((.((((((.......)))))).))))).)))...))))))))))..))).)))))))))))..))..

Structure

uu  ga           -   -G          --a   -     c      ga 
  ga  gugaUGACAGA AGA  AGAGAGCACA   ccc ggcag agcgac  c
  ||  ||||||||||| |||  ||||||||||   ||| ||||| ||||||  g
  cu  cguuacugucu ucu  ucucucgugu   ggg ccguc ucgcug  g
ac  gc           a   ag          gcc   a     u      gc 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR156 family [1]. It is predicted to target mRNAs coding for Squamosa-promoter Binding Protein (SBP)-like transcription factors.

Genome context

Chr9: 18289107-18289212 [-]

Mature osa-miR156k

• Accession: MIMAT0001020
• Description: Oryza sativa osa-miR156k mature miRNA
• Sequence: 11 - UGACAGAAGAGAGAGAGCACA - 31
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799