Stem-loop sequence osa-MIR159a

Accession

MI0001092 (change log)

Description

Oryza sativa miR159a stem-loop

Gene family

MIPF0000010; MIR159

Literature search

84 open access papers mention osa-MIR159a
(503 sentences)

Stem-loop

   guugu   c  u                  aa     u   gc   -    c   ug    g     u    g uc    u      cu   uguucaucauucagcucgagaucugaaagaaacuacuccaauuua 
5'      gga gu gagcuccuuucgguccaa  agggg guu  ugu gggu gau  agcu cuggg caug a  ccgu agccua  cca                                             u
        ||| || ||||||||||||||||||  ||||| |||  ||| |||| |||  |||| ||||| |||| |  |||| ||||||  |||                                              
3'      ucu cg cucgagggaaguuagguu  ucucc cag  aca ccca cua  ucga gaccc guac u  ggua ucggau  ggu                                             a
   uguuu   a  u                  --     -   gu   u    a   cg    g     c    g uc    u      ag   uguugcucaugagguaguaaaaggauagauguguguaugauaauc 

Deep sequencing

3041 reads, 1.55e+03 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Comments

This sequence is a predicted paralogue of the previously identified miR159/JAW family [1]. It is predicted to target mRNAs coding for MYB and TCP transcription factors.

Genome context

• Coordinates (MSU7): Chr1: 17681923-17682194 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001092

Mature sequence osa-miR159a.2

• Accession: MIMAT0009200
• Sequence: 201 - uugcaugccccaggagcugca - 221
• Deep sequencing: 687 reads, 2 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS0000362C4B_39947

Mature sequence osa-miR159a.1

• Accession: MIMAT0001022
• Previous IDs: osa-miR159a
• Sequence: 242 - uuuggauugaagggagcucug - 262
• Deep sequencing: 2239 reads, 2 experiments
• Evidence: by similarity; MI0000218
• Database links:
  • RNAcentral:URS000035D5E3_39947

References

1. PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" Jones-Rhoades MW, Bartel DP Mol Cell. 14:787-799(2004).
2. PMID:19055717 "Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice" Lacombe S, Nagasaki H, Santi C, Duval D, Piegu B, Bangratz M, Breitler JC, Guiderdoni E, Brugidou C, Hirsch J, Cao X, Brice C, Panaud O, Karlowski WM, Sato Y, Echeverria M BMC Plant Biol. 8:123(2008).