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miRBase |
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Stem-loop sequence osa-MIR159a |
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Accession | MI0001092 (change log) | ||||
Description | Oryza sativa miR159a stem-loop | ||||
Gene family | MIPF0000010; MIR159 | ||||
Literature search |
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84 open access papers mention osa-MIR159a | ||||
Stem-loop |
guugu c u aa u gc - c ug g u g uc u cu uguucaucauucagcucgagaucugaaagaaacuacuccaauuua 5' gga gu gagcuccuuucgguccaa agggg guu ugu gggu gau agcu cuggg caug a ccgu agccua cca u ||| || |||||||||||||||||| ||||| ||| ||| |||| ||| |||| ||||| |||| | |||| |||||| ||| 3' ucu cg cucgagggaaguuagguu ucucc cag aca ccca cua ucga gaccc guac u ggua ucggau ggu a uguuu a u -- - gu u a cg g c g uc u ag uguugcucaugagguaguaaaaggauagauguguguaugauaauc |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Comments |
This sequence is a predicted paralogue of the previously identified miR159/JAW family [1]. It is predicted to target mRNAs coding for MYB and TCP transcription factors. |
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Genome context |
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Database links |
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Mature sequence osa-miR159a.2 |
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Accession | MIMAT0009200 |
Sequence |
201 - uugcaugccccaggagcugca - 221 |
Deep sequencing | 687 reads, 2 experiments |
Evidence | experimental; cloned [1] |
Database links |
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Mature sequence osa-miR159a.1 |
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Accession | MIMAT0001022 |
Previous IDs | osa-miR159a |
Sequence |
242 - uuuggauugaagggagcucug - 262 |
Deep sequencing | 2239 reads, 2 experiments |
Evidence | by similarity; MI0000218 |
Database links |
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References |
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1 |
PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
Mol Cell. 14:787-799(2004).
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2 |