Stem-loop osa-MIR159d

Accession

MI0001095

Description

Oryza sativa osa-MIR159d precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

76 open access papers mention osa-MIR159d
(334 sentences)

Sequence

59 reads, 44 reads per million, 2 experiments

ugaugugaggaggagcuccuuucgauccaauucaggagaggaaguggugggaugcagcugccgguucauggauaccucugcaguucaugccgguaggccugcacuugcauggguuugcaugaccugggagaugaaccugccauuguguuccucuauugAUUGGAUUGAAGGGAGCUCCGgcuacaccua
....(((((..((((((((((((((((((((.(((.(((((((((((((((.(.((.((.((((.(((((.(.((((.((((((.((.(((....))).)).)).)))).)))).).))))).)))).)).))).))))))))....))))))).)))))))))))))))))))))))..)).)))...

Structure

ugau   -  ga                    u   g       ----        a g  g  g    u     g u    c    -  u  u   g 
    gug ag  ggagcuccuuucgauccaau cag agaggaa    gugguggg u ca cu ccgg ucaug a accu ugca gu ca gcc g
    ||| ||  |||||||||||||||||||| ||| |||||||    |||||||| | || || |||| ||||| | |||| |||| || || |||  
    cac uc  CCUCGAGGGAAGUUAGGUUA guu ucuccuu    uaccgucc a gu ga gguc aguac u uggg acgu ca gu cgg u
-auc   a  gG                    -   a       gugu        a -  a  g    c     g u    u    u  c  c   a 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR159/JAW family [1]. It is predicted to target mRNAs coding for MYB and TCP transcription factors.

Genome context

Chr1: 6563756-6563944 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR159d

Mature osa-miR159d

• Accession: MIMAT0001025
• Description: Oryza sativa osa-miR159d mature miRNA
• Sequence: 159 - AUUGGAUUGAAGGGAGCUCCG - 179
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799