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miRBase |
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Stem-loop sequence osa-MIR159d |
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Accession | MI0001095 (change log) | |||||
Description | Oryza sativa miR159d stem-loop | |||||
Gene family | MIPF0000010; MIR159 | |||||
Literature search |
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76 open access papers mention osa-MIR159d | |||||
Stem-loop |
ugau - ga u g ---- ug aug g g u g u c - u u g 5' gug ag ggagcuccuuucgauccaau cag agaggaa gugg gg ca cu ccgg ucaug a accu ugca gu ca gcc g ||| || |||||||||||||||||||| ||| ||||||| |||| || || || |||| ||||| | |||| |||| || || ||| 3' cac uc ccucgagggaaguuagguua guu ucuccuu uacc cc gu ga gguc aguac u uggg acgu ca gu cgg u -auc a gg - a gugu gu -aa a g c g u u u c c a |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Comments |
This sequence is a predicted paralogue of the previously identified miR159/JAW family [1]. It is predicted to target mRNAs coding for MYB and TCP transcription factors. |
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence osa-miR159d |
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Accession | MIMAT0001025 |
Sequence |
159 - auuggauugaagggagcuccg - 179 |
Deep sequencing | 1775 reads, 2 experiments |
Evidence | by similarity; MI0000189 |
Database links |
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References |
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1 |
PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
Mol Cell. 14:787-799(2004).
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