Stem-loop sequence osa-MIR159e

Accession

MI0001096 (change log)

Description

Oryza sativa miR159e stem-loop

Gene family

MIPF0000010; MIR159

Literature search

76 open access papers mention osa-MIR159e
(344 sentences)

Stem-loop

   g   a  -a   a          u         u   g        ----   ua  aug  g  g   gu     g u    c    - u c     a 
5'  aug ag  aga gagcucccuu cgauccaau cag agaggaag    ugg  gg   ca cu ccg  ucaug a accu ugga g g agggc a
    ||| ||  ||| |||||||||| ||||||||| ||| ||||||||    |||  ||   || || |||  ||||| | |||| |||| | | ||||| a
3'  uac uc  ucu cucgagggaa guuagguua guu ucuccuuc    acc  cc   gu ga ggc  aguac u uggg acuu c c uccug u
   -   a  ga   c          -         -   a        uguu   gc  -aa  a  g   uc     g u    u    u c a     a 

Deep sequencing

1777 reads, 1.1e+03 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Comments

This sequence is a predicted paralogue of the previously identified miR159/JAW family [1]. It is predicted to target mRNAs coding for MYB and TCP transcription factors.

Genome context

• Coordinates (MSU7): Chr1: 9760708-9760898 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001096

Mature sequence osa-miR159e

• Accession: MIMAT0001026
• Sequence: 161 - auuggauugaagggagcuccu - 181
• Deep sequencing: 1756 reads, 2 experiments
• Evidence: by similarity; MI0000544
• Database links:
  • RNAcentral:URS000052176E_39947

References

1. PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" Jones-Rhoades MW, Bartel DP Mol Cell. 14:787-799(2004).