Stem-loop osa-MIR159e

Accession

MI0001096

Description

Oryza sativa osa-MIR159e precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

76 open access papers mention osa-MIR159e
(348 sentences)

Sequence

60 reads, 46 reads per million, 2 experiments

gaugaagaagaagagcucccuuucgauccaauucaggagaggaagugguaggaugcagcugccgguucauggauaccucuggagugcagggcaaauaguccuacccuuucauggguuugcaugacucgggagaugaacccgccauugucuuccucuauugAUUGGAUUGAAGGGAGCUCCUcuagcuacau
.(((.((.(((.((((((((((.(((((((((.(((.((((((((((((.((...((.((.((((.(((((.(.((((.(((((...(((((.....)))))....))))).)))).).))))).)))).)).))...))))))....)))))))).)))))))))))))))))))))).)))..)).)))

Structure

g   a  -a   a          u         u   g        ----    a  aug  g  g    u     g u    c     -ugc     a 
 aug ag  aga gagcucccuu cgauccaau cag agaggaag    uggu gg   ca cu ccgg ucaug a accu uggag    agggc a
 ||| ||  ||| |||||||||| ||||||||| ||| ||||||||    |||| ||   || || |||| ||||| | |||| |||||    ||||| a
 uac uc  ucU CUCGAGGGAA GUUAGGUUA guu ucuccuuc    accg cc   gu ga ggcu aguac u uggg acuuu    uccug u
-   a  ga   C          -         -   a        uguu    -  caa  a  g    c     g u    u     ccca     a 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR159/JAW family [1]. It is predicted to target mRNAs coding for MYB and TCP transcription factors.

Genome context

Chr1: 9760708-9760898 [-]

Mature osa-miR159e

• Accession: MIMAT0001026
• Description: Oryza sativa osa-miR159e mature miRNA
• Sequence: 161 - AUUGGAUUGAAGGGAGCUCCU - 181
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799