Stem-loop osa-MIR159f

Accession

MI0001097

Description

Oryza sativa osa-MIR159f precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

76 open access papers mention osa-MIR159f
(356 sentences)

Sequence

102 reads, 83 reads per million, 2 experiments

gaagaagaagacgagcucccuucgauccaauccaggagaggaagugguaggaugcagcugccgguucauggauaccucugcagugcaugucguaggcuugcacuugcauggguuugcaugacccgggagaugaacccaccauugucuuccucuuaugCUUGGAUUGAAGGGAGCUCUAcaccucucuc
..(((((..(..((((((((((((((((((..((.(((((((((((((.((...((.((.((((.(((((.(.((((.(((((((((.(((...))).))))).)))).)))).).))))).)))).)).))...))))))....))))))))).)).))))))))))))))))))..)..)).))).

Structure

ga   -  aa ac                  uc  g         ----    a  aug  g  g    u     g u    c    -     u   g 
  aga ag  g  gagcucccuucgauccaa  ca gagaggaag    uggu gg   ca cu ccgg ucaug a accu ugca gugca guc  
  ||| ||  |  ||||||||||||||||||  || |||||||||    |||| ||   || || |||| ||||| | |||| |||| ||||| ||| u
  ucu uc  c  CUCGAGGGAAGUUAGGUU  gu uucuccuuc    acca cc   gu ga ggcc aguac u uggg acgu cacgu cgg  
-c   c  ca AU                  -C  a         uguu    -  caa  a  g    c     g u    u    u     u   a 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR159/JAW family [1]. It is predicted to target mRNAs coding for MYB and TCP transcription factors.

Genome context

Chr1: 6693112-6693299 [+]

Mature osa-miR159f

• Accession: MIMAT0001027
• Description: Oryza sativa osa-miR159f mature miRNA
• Sequence: 158 - CUUGGAUUGAAGGGAGCUCUA - 178
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799