Stem-loop osa-MIR319a

Accession

MI0001098

Description

Oryza sativa osa-MIR319a precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

55 open access papers mention osa-MIR319a
(254 sentences)

Sequence

755 reads, 527 reads per million, 2 experiments

uguguaagaagagagcucucuucaguccacucucagauggcuguaggguuuuauuAGCUGCCGAAUCAUCCAUUCAccuaccaagaaaguugcaggaguguaucucuugguagcggACUGGAUGACGCGGGAGCUAAaauuuagcucugcgccguuuguggUUGGACUGAAGGGUGCUCCCuugcucaagc
((.(((((..(.((((.((((((((((((.((.((((((((.((((((((...((((((.(((..(((((((.((..(((((((((....((((....))))..)))))))))..)).)))))))..))).)))))).....)))))))))))))))).)).)))))))))))).)))))))))).))...

Structure

---  u     aa a    u            c  u        u        --uua      G   AA       U  Ac         aagu    g 
   ug guaag  g gagc cucuucagucca uc cagauggc guaggguu     uuAGCU CCG  UCAUCCA UC  cuaccaaga    ugca g
   || |||||  | |||| |||||||||||| || |||||||| ||||||||     |||||| |||  ||||||| ||  |||||||||    ||||  
   ac cguuC  C CUCG GGGAAGUCAGGU gg guuugccg cgucucga     AAUCGA GGC  AGUAGGU Ag  gaugguucu    augu a
cga  u     -- -    U            U  u        -        uuuaa      G   GC       C  gc         --cu    g 

Annotation confidence Not enough data

Genome context

Chr1: 26823282-26823472 [-]

Mature osa-miR319a-3p.2-3p

• Accession: MIMAT0001028
• Description: Oryza sativa osa-miR319a-3p.2-3p mature miRNA
• Sequence: 162 - UUGGACUGAAGGGUGCUCCC - 181
• Evidence: not_experimental

Mature osa-miR319a-5p

• Accession: MIMAT0020914
• Description: Oryza sativa osa-miR319a-5p mature miRNA
• Sequence: 56 - AGCUGCCGAAUCAUCCAUUCA - 76
• Evidence: experimental ; Illumina [2]

Mature osa-miR319a-3p

• Accession: MIMAT0020915
• Description: Oryza sativa osa-miR319a-3p mature miRNA
• Sequence: 117 - ACUGGAUGACGCGGGAGCUAA - 137
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799


2. PubMed ID: 21525786
   Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
   "Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D"
   "RNA Biol (2011) 8:538-547